QuarterlyTechnical Report

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Record-keeping of waterfowls of Issyk-Kul lake is carried out. Materials of registration have been processed on Issyk-Kul oblast as well as materials of tagging of birds. New tools for birds catching have been repaired and created. Biological samples from 20 birds have been taken.

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ISTC Project No. KR1429

Epidemiological monitoring of avian virus circulation in the nature, an estimation of biological danger of the pestholes in Kyrgyz Republic

QuarterlyTechnical Report

on the work performed from 01.12.2010 to 28.02.2011

- Quarter no. 7 -

    State Sanitary and Epidemiological Supervision Department under the Ministry of

      Health of Kyrgyz Republic  

 address: 535, Frunze st, Bishkek, 720033, , Kyrgyz Republic

Project Manager

Kasymbekova Kaliya Toktosunovna

Doctor of Medicine, PhD, M.D.

   

Signature / Signature / 20 March 2011

  1. Summary of Technical Progress
    1. Current Technical Status
Task Start End Status / Comments
Task 1 Definition of migration birds concentration places:

- purchasing of the equipment, expendable materials and others

- organization of expeditions to collect field material

-observation over terms and intensity of migrations

-ringing of 900 birds

01.12.2011 28.02.2011 Record-keeping of waterfowls of Issyk-Kul lake is carried out. Materials of registration have been processed on Issyk-Kul oblast as well as materials of tagging of birds. New tools for birds catching have been repaired and created. Biological samples from 20 birds have been taken.

 Due to lack of funding expeditionary trips for the collection of biological samples have not been carried out. Only short-term expedition was organized to Issyk-Kul oblast to register wintering waterfowls on Issyk-Kul lake. In the course of this expedition biological samples from 20 birds have been collected. Catching tools and expedition equipment have been repaired. 23 nets to catch birds with a total length of 250 meters have been produced. The booklet about the project and information for the annual “Innovative Technologies of National Academy of Sciences” has been prepared as well as the article for collected papers of Issyk-Kul nature reserve -“Colonies of waterfowls of Issyk-Kul lake”. Materials for tagging of birds have been processed and reports have been sent to the center of ringing in Almaty (Kazakhstan). Permits for catching and tagging of birds, to visit bordering area and other necessary documents have been obtained.

Task 2

The organization of molecular - genetic and virological researches of avian  flu

Quarter 3 Quarter 12 Work is carried out ahead of the work plan.

Due to the absence of poultry farms which can deliver sterile chicken embryos, we used cell cultures for virus isolation. Virological researches have been conducted with transplantable line of cell culture of dog’s kidney (MDCK).

 
Task 3

Collection and analysis of literary data on H5N1 avian influenza

01.09.2010 30.11.2010 Scheduled issues of epizootic (epidemiological) monitoring are performed.
Collection  and development of materials on postmortem diagnostics of avian influenza 01.09.2010 30.11.2010 Postmortem examination of 26 dead birds of 3 species found in Issyk-Kul oblast.
Clinical epidemiological diagnostics of  H5N1 avian influenza among  waterfowls and inhabited near lakes and ponds birds  01.09.2010 30.11.2010 In the field conditions clinical examination of birds is not conducted.
Task 4

Molecular-genetic characteristic of avian flu virus, circulating in natural reservoirs.

Quarter 1 Quarter 12 Subtyping of viruses is conducted. We are planning to conduct strain sequencing with foreign collaborators.

 

Task 5

Mapping of  households farms for the presence of poultry

01.09.2010 30.11.2010 Four districts of Talas oblast have been surveyed by visits for the presence of poultry. 
    1. Tasks of the work plan

Task 1: Definition of migration birds concentration places

  • State / Situation at the beginning of the current quarter

Дописать 

  • Fulfilled work
 

Дописать 

  • Results by the end of the current quarter

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Biological samples were taken from birds belonging to 2 species (Table 1).  

Table 1 

The list of birds from which samples on influenza virus were taken in Quarter 7 (December 2010- February 2011)  

Bird species  (English, Latin, Russian) Number
Common Coot (Fulica atra) - лысуха 1
Whooper swan (Cygnus cygnus) - лебедь-кликун 19
  Total: 20
  • Personnel Commitments
Name Category Days
Ostachshenko Anatolii I 31
Toropova Valentina I 15
Kumushaliev Bektur I 25
Davletbakov Askar II 10
Milko Dmitrii III 6
Chernova Julia III 30
Vorobev Aleksandr IV 28
Total    
 

Task 2: The organization of molecular - genetic and virological researches of avian  flu

  • State / Situation at the beginning of the current quarter

At the project beginning molecular genetic researches of birds have been conducted. Virological researches on cell culture of dog’s kidney was conducted, however, there was no virus isolation. There were samples with cytopathogenic effects.  

  • Fulfilled work
 

  Total number of conducted researches is 343.  33 species of birds were exposed to molecular-genetic researches, presence of influenza A were detected in 3 bird species.    

  • Results by the end of the current quarter
 

Table 2

Results of monthly molecular-genetic researches of birds

# Month Number of researched birds Out of them positive A influenza positive Н1 Н3 Н5
1 IХ-2010 194 0        
2 X-2010 93 2 2 0 0 0
3 XI-2010 20 0 0 0 0 0
  Total 307 2 (0,6%) 2 0 0 0
 

Positive samples in PCR reaction in a Real time mode with the threshold line before 30 cycles, thus indicating the presence of sufficient RNA RNase P gene indicating the specimen is of acceptable quality. At the same time primary infection and 2 passages on a cell culture have been conducted out of them in 3 cases (from materials from Night Heron and 2 Mallards ) cytopathogenic virus effect is detected. These isolates are typed in hemagglutination reaction and hemagglutination inhibition of reaction. Preliminary results of virological researches see below.  
 
 
 
 
 
 
 

Table 3

Results of virological researches

# of lab Quarter Name of a bird Date of sampling Place of sampling PCR result Results of subtyping
I Black-crowned night heron 22.07.2009 Surroundings of Tokmok town positive гр  А (Н1)?
             
1740 VI Mallard 28.10.2010 Issyk-Kul oblast, Ton district, surroundings of Toguz-Bulak village positive гр  В/Florida?
1754 VI Mallard 29.10.2010 Issyk-Kul oblast, Ton district, surroundings of Toguz-Bulak village positive гр  А (Н3)?

Total number of conducted researches is 307.  46 species of birds were exposed to molecular-genetic researches ( table 4). Research were conducted by real time  PCR on influenza A, subtypes Н1, Н3 and  Н5. During researches of 46 bird species in 2 samples (0,6%)  from 1 bird species  presence of influenza A virus is detected, however results of sybtyping on Н1, Н3. we find  on sample  Н5 were negative Positive samples on influenza A were frozen at -70 Celsius degree for further researches. It is necessary to conduct researches on subtypes H2, H4, H6, H15 and N1-N9 with foreign collaborators. For this purpose business trips to laboratories of foreign collaborators to exchange experiences is necessary. 

 

Results of molecular-genetic investigations of birds in Quarter 6 (September-December, 2010)

                                                                                                       Table 4

Number of samples Bird species Isolated RNA out of them Positive out of them
  А influenza Bird species
307 46 307 2 (0,6%) 1(2,1%)
 

  
 
 
 
 

Out of 307 researches birds, 293 have been researched in Issyk-Kul oblast. In Issyk-Kul oblast positive samples of avian influenza were found.                                       

  Table 5

  Research area Total researched birds Out of them including
  positive Bird species
1 Issyk-Kul oblast 293 2 Mallard
2 Chui oblast 14    
  Total 307 2  
  

 During analysis of influenza A virus detection among waterfowls it was determined that more often in the reporting period the positive A influenza sample have been detected among Mallards (2 positive).

                             

Detection of influenza virus among various species of waterfowls in Quarter 6 (September-December, 2010)

                                                                                                                                                 Table 6  

# Bird species Number of birds Number of analyses Negative A influenza positive Н1 Н3 Н5
1 Авдотка/Eurasian thick knee 1 1 1        
2 Сommon Snipe/Бекас 2 2 2        
3 Egret/ Белая  цапля (подранок) 1 1 1        
4 White-eyed pochard/Белоглазый нырок  9 9 9        
5   Temminck's stint/Белохвостый песочник 7 7 7        
6 Bittern/Большая  выпь 2 2 2        
7 Greenshank/Большой  улит 3 3 3        
8 Plover/Бурокрылая  ржанка 1 1 1        
9 Rail /Водяной  пастушок 1 1 1        
10 Ring dotterel /Галстучник 2 2 2        
11 Eurasian Woodcock /Гаршнеп 1 1 1        
12 Broad-billed Sandpiper / Грязовик 1 1 1        
13 Yellow Wagtail/Желтая трясогузка 2 2 2        
14 Ruddy Turnstone / Камнешарка 3 3 3        
15 Common Moorhen/ Камышница 1 1 1        
16 Chukar /Кеклик 4 4 4        
17 Curlew Sandpiper / Краснозобик 4 4 4        
18 Common Tern /Крачка речная 1 1 1        
19 Black Tern /Крачка черная 1 1 1        
20 Mallard/Кряква 25 25 19 2 0 0 0
21 Curlew Sandpiper /Кулик-воробей 38 38 38        
22 Bald Coot/Лысуха 9 9 9        
23 Little Grebe/ Малая поганка 5 5 5        
24 Pygmy Cormorant /Малый баклан 1 1 1        
25 Little Ringed Plover /Малый зуек 5 5 5        
26 Terek Sandpiper /Мородунка 1 1 1        
27 Kentish Plover /Морской зуек 2 2 2        
28 Common Straling /Обыкновенный скворец 4 4 4        
29 Ruddy Shelduck /Огарь 5 5 5        
30 Black headed Gull/ Озерная чайка 18 18 18        
31 Common Sandpiper / Перевозчик  1 1 1        
32 Common Tern / Речная крачка 1 1 1        
33 Gadwall /Серая  утка 2 2 2        
34 Common Redshank /Травник 2 2 2        
35 Grey Plover / Тулес 1 1 1        
36 Ruff / Турухтан 95 95 95        
37 Common Pheasant / Фазан 5 5 5        
38 Wood Sandpiper / Фифи 15 15 15        
39 Black-winged Stilt / Ходулочник 1 1 1        
40 Tufted Duck / Хохлатая чернеть 4 4 4        
41 Black Tern / Черная крачка 1 1 1        
42 Dunlin / Чернозобик 6 6 6        
43 Green Sandpiper / Черныш 1 1 1        
44 Northern Lapwing /Чибис  2 2 2        
45 Common Teal / Чирок-свистунок 9 9 9        
46 Northern Pintail / Шилохвость самец 1 1 1        
  Total 307 307 301 2      

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